• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar
Recipes Grape

Recipes Grape

Yummy Food Recipes

  • Home
  • Appetizer
  • Breakfast
  • Dinner
  • Lunch
  • Dessert
  • About Us
  • Contact Us
Recipes Grape
  • Home
  • Appetizer
  • Breakfast
  • Dinner
  • Lunch
  • Dessert
  • About Us
  • Contact Us
Dessert / Apple Cinnamon Cheesecake Cupcakes: The Ultimate Fall Dessert Recipe

Apple Cinnamon Cheesecake Cupcakes: The Ultimate Fall Dessert Recipe

June 10, 2025 by BrooklynDessert

Apple Cinnamon Cheesecake Cupcakes: Prepare to be utterly captivated by these miniature marvels! Imagine the creamy, dreamy indulgence of a classic cheesecake swirled with the warm, comforting flavors of apple pie – all nestled into a perfectly portioned cupcake. It’s a dessert symphony in every bite, and trust me, you’ll want to make these again and again.

While the exact origins of combining cheesecake and apple cinnamon in a cupcake format are a bit hazy, the inspiration is clear. Cheesecake itself boasts a rich history, dating back to ancient Greece, while the pairing of apples and cinnamon has been a beloved culinary tradition for centuries, particularly in autumnal desserts. Think apple pie, apple crisp, and apple strudel – these flavors evoke feelings of warmth, nostalgia, and cozy gatherings.

What makes these Apple Cinnamon Cheesecake Cupcakes so irresistible? It’s the delightful contrast of textures – the smooth, velvety cheesecake filling against the tender, spiced cupcake base. The sweet and tangy notes of the cheesecake perfectly complement the warm, comforting flavors of apple and cinnamon. Plus, their individual size makes them incredibly convenient for parties, potlucks, or simply a delightful personal treat. They’re easy to transport, require no slicing, and offer the perfect portion of decadent goodness. Get ready to experience a little slice of heaven!

Apple Cinnamon Cheesecake Cupcakes this Recipe

Ingredients:

  • For the Crust:
    • 1 ½ cups graham cracker crumbs
    • 5 tablespoons unsalted butter, melted
    • ¼ cup granulated sugar
    • ¼ teaspoon ground cinnamon
  • For the Cheesecake Filling:
    • 2 (8 ounce) packages cream cheese, softened
    • ¾ cup granulated sugar
    • 2 large eggs
    • ½ cup sour cream
    • 1 teaspoon vanilla extract
    • ½ teaspoon ground cinnamon
    • ¼ teaspoon ground nutmeg
  • For the Apple Cinnamon Topping:
    • 2 medium apples, peeled, cored, and diced (Granny Smith or Honeycrisp work well)
    • 2 tablespoons unsalted butter
    • ¼ cup packed light brown sugar
    • 1 tablespoon all-purpose flour
    • ½ teaspoon ground cinnamon
    • ¼ teaspoon ground nutmeg
    • 2 tablespoons water
    • 1 teaspoon lemon juice
  • Optional Garnish:
    • Whipped cream
    • Cinnamon sticks
    • Caramel sauce

Preparing the Graham Cracker Crust:

  1. Combine the dry ingredients: In a medium bowl, I like to start by mixing together the graham cracker crumbs, granulated sugar, and ground cinnamon. This ensures that the cinnamon is evenly distributed throughout the crust.
  2. Add the melted butter: Pour the melted butter into the bowl with the dry ingredients. Use a fork or your fingers to thoroughly combine everything until the mixture resembles wet sand. It should hold its shape when you press it together.
  3. Press into cupcake liners: Line a 12-cup muffin tin with paper cupcake liners. Spoon about 2 tablespoons of the graham cracker mixture into each liner. Use the bottom of a measuring cup or your fingers to firmly press the mixture into an even layer at the bottom of each liner. This is important for creating a solid base for the cheesecake filling.
  4. Pre-bake the crust: Bake the crust in a preheated oven at 350°F (175°C) for 5-7 minutes. This helps to set the crust and prevent it from becoming soggy. Remove the muffin tin from the oven and let the crusts cool slightly while you prepare the cheesecake filling.

Making the Cheesecake Filling:

  1. Cream the cream cheese and sugar: In a large bowl, using an electric mixer (either a stand mixer or a hand mixer), beat the softened cream cheese and granulated sugar together until smooth and creamy. Make sure there are no lumps of cream cheese remaining. This step is crucial for a smooth and creamy cheesecake.
  2. Add the eggs: Beat in the eggs one at a time, mixing well after each addition. Be careful not to overmix at this stage, as overmixing can incorporate too much air into the batter, which can cause the cheesecake to crack during baking.
  3. Incorporate the sour cream and vanilla: Stir in the sour cream and vanilla extract until just combined. The sour cream adds moisture and tang to the cheesecake, while the vanilla extract enhances the overall flavor.
  4. Add the spices: Gently fold in the ground cinnamon and ground nutmeg until evenly distributed. These spices complement the apple cinnamon topping beautifully.

Preparing the Apple Cinnamon Topping:

  1. Sauté the apples: In a medium skillet, melt the butter over medium heat. Add the diced apples and cook for about 5-7 minutes, or until they are slightly softened. Stir occasionally to prevent them from burning.
  2. Add the brown sugar and flour: Sprinkle the brown sugar and flour over the apples. Stir to coat the apples evenly. The flour will help to thicken the sauce.
  3. Incorporate the spices and water: Add the ground cinnamon, ground nutmeg, and water to the skillet. Stir well to combine.
  4. Simmer the topping: Bring the mixture to a simmer and cook for another 3-5 minutes, or until the apples are tender and the sauce has thickened slightly. Stir occasionally to prevent sticking.
  5. Add lemon juice: Stir in the lemon juice. The lemon juice adds a touch of brightness and helps to balance the sweetness of the apples. Remove the skillet from the heat and let the apple cinnamon topping cool slightly.

Assembling and Baking the Cupcakes:

  1. Fill the cupcake liners: Spoon the cheesecake filling into the cupcake liners, filling them about ¾ full. Be careful not to overfill them, as the filling will expand during baking.
  2. Top with apple cinnamon topping: Spoon a generous amount of the apple cinnamon topping over each cupcake. Gently press the topping into the filling.
  3. Bake the cupcakes: Bake the cupcakes in the preheated oven at 350°F (175°C) for 18-22 minutes, or until the edges are set and the centers are slightly jiggly. The baking time may vary depending on your oven, so keep a close eye on them.
  4. Cool the cupcakes: Turn off the oven and crack the oven door slightly. Let the cupcakes cool in the oven for 30 minutes. This helps to prevent them from cracking.
  5. Refrigerate the cupcakes: Remove the cupcakes from the oven and let them cool completely at room temperature. Then, transfer them to the refrigerator and chill for at least 2 hours, or preferably overnight. This allows the cheesecake filling to set completely and the flavors to meld together.

Serving and Storing:

  1. Serve chilled: Serve the apple cinnamon cheesecake cupcakes chilled. They are best enjoyed cold.
  2. Optional garnish: Before serving, you can garnish the cupcakes with whipped cream, a cinnamon stick, and a drizzle of caramel sauce, if desired.
  3. Storing leftovers: Store any leftover cupcakes in an airtight container in the refrigerator for up to 3-4 days.

Apple Cinnamon Cheesecake Cupcakes

Conclusion:

And there you have it! These Apple Cinnamon Cheesecake Cupcakes are truly something special, and I genuinely believe they’re a must-try for anyone who loves the comforting flavors of fall or simply appreciates a delicious, perfectly portioned dessert. The creamy cheesecake filling, swirled with that warm, spiced apple cinnamon mixture, baked into a tender cupcake base – it’s a symphony of textures and tastes that will leave you wanting more. I know I always do!

But what makes these cupcakes so irresistible? It’s the perfect balance. The sweetness of the apples is tempered by the tang of the cream cheese, and the cinnamon adds a warmth that makes them incredibly comforting. Plus, the cupcake format makes them ideal for parties, potlucks, or even just a special treat for yourself. No messy slicing required!

Why are these Apple Cinnamon Cheesecake Cupcakes a must-bake? Because they are easy to make, incredibly delicious, and guaranteed to impress. They are the perfect dessert to bring to any gathering, or simply enjoy at home with a cup of coffee or tea.

Now, let’s talk about serving suggestions and variations! While these cupcakes are absolutely divine on their own, there are plenty of ways to customize them to your liking. For an extra touch of elegance, you could drizzle them with a caramel sauce or sprinkle them with chopped pecans or walnuts. A dollop of whipped cream or a scoop of vanilla ice cream would also be a fantastic addition.

If you’re feeling adventurous, you could try adding a streusel topping to the cupcakes before baking. A simple mixture of flour, butter, sugar, and cinnamon would add a delightful crunch and even more flavor. Another variation would be to use different types of apples. Granny Smith apples would add a tartness that would complement the sweetness of the cheesecake, while Honeycrisp apples would provide a crisp, juicy texture.

For those who are gluten-free, you can easily substitute the all-purpose flour in the cupcake base with a gluten-free blend. Just be sure to use a blend that is designed for baking and contains xanthan gum to help bind the ingredients together. You could also use gluten-free graham crackers for the crust if you are making a full-sized cheesecake.

And if you’re looking for a vegan option, you can substitute the cream cheese with a vegan cream cheese alternative and the eggs with flax eggs. Just be sure to adjust the baking time accordingly, as vegan baked goods tend to bake a bit faster.

I’m so excited for you to try this recipe! I truly believe that these Apple Cinnamon Cheesecake Cupcakes will become a new favorite in your household. They are perfect for any occasion, from a casual weeknight dessert to a festive holiday gathering.

So, what are you waiting for? Gather your ingredients, preheat your oven, and get ready to bake up a batch of these delicious cupcakes. I promise you won’t regret it!

And once you’ve made them, I would absolutely love to hear about your experience. Did you make any variations? What did you think of the flavor? Share your photos and comments with me – I can’t wait to see your creations! Happy baking!


Apple Cinnamon Cheesecake Cupcakes: The Ultimate Fall Dessert Recipe

Mini apple cinnamon cheesecakes with a graham cracker crust and a spiced apple topping. Perfect for fall!

Prep Time30 minutes
Cook Time30 minutes
Total Time300 minutes
Category: Dessert
Yield: 12 cupcakes
Save This Recipe

Ingredients

  • 1 ½ cups graham cracker crumbs
  • 5 tablespoons unsalted butter, melted
  • ¼ cup granulated sugar
  • ¼ teaspoon ground cinnamon
  • 2 (8 ounce) packages cream cheese, softened
  • ¾ cup granulated sugar
  • 2 large eggs
  • ½ cup sour cream
  • 1 teaspoon vanilla extract
  • ½ teaspoon ground cinnamon
  • ¼ teaspoon ground nutmeg
  • 2 medium apples, peeled, cored, and diced (Granny Smith or Honeycrisp work well)
  • 2 tablespoons unsalted butter
  • ¼ cup packed light brown sugar
  • 1 tablespoon all-purpose flour
  • ½ teaspoon ground cinnamon
  • ¼ teaspoon ground nutmeg
  • 2 tablespoons water
  • 1 teaspoon lemon juice
  • Whipped cream
  • Cinnamon sticks
  • Caramel sauce

Instructions

  1. Prepare the Graham Cracker Crust:
    • In a medium bowl, combine graham cracker crumbs, granulated sugar, and ground cinnamon.
    • Add the melted butter and mix until the mixture resembles wet sand.
    • Line a 12-cup muffin tin with paper cupcake liners. Spoon about 2 tablespoons of the graham cracker mixture into each liner. Press firmly into an even layer.
    • Bake in a preheated oven at 350°F (175°C) for 5-7 minutes. Remove from oven and let cool slightly.
  2. Make the Cheesecake Filling:
    • In a large bowl, beat the softened cream cheese and granulated sugar until smooth and creamy.
    • Beat in the eggs one at a time, mixing well after each addition.
    • Stir in the sour cream and vanilla extract until just combined.
    • Gently fold in the ground cinnamon and ground nutmeg until evenly distributed.
  3. Prepare the Apple Cinnamon Topping:
    • In a medium skillet, melt the butter over medium heat. Add the diced apples and cook for about 5-7 minutes, or until they are slightly softened.
    • Sprinkle the brown sugar and flour over the apples. Stir to coat the apples evenly.
    • Add the ground cinnamon, ground nutmeg, and water to the skillet. Stir well to combine.
    • Bring the mixture to a simmer and cook for another 3-5 minutes, or until the apples are tender and the sauce has thickened slightly.
    • Stir in the lemon juice. Remove the skillet from the heat and let the apple cinnamon topping cool slightly.
  4. Assemble and Bake the Cupcakes:
    • Spoon the cheesecake filling into the cupcake liners, filling them about ¾ full.
    • Spoon a generous amount of the apple cinnamon topping over each cupcake. Gently press the topping into the filling.
    • Bake the cupcakes in the preheated oven at 350°F (175°C) for 18-22 minutes, or until the edges are set and the centers are slightly jiggly.
    • Turn off the oven and crack the oven door slightly. Let the cupcakes cool in the oven for 30 minutes.
    • Remove the cupcakes from the oven and let them cool completely at room temperature. Then, transfer them to the refrigerator and chill for at least 2 hours, or preferably overnight.
  5. Serve and Store:
    • Serve the apple cinnamon cheesecake cupcakes chilled.
    • Before serving, you can garnish the cupcakes with whipped cream, a cinnamon stick, and a drizzle of caramel sauce, if desired.
    • Store any leftover cupcakes in an airtight container in the refrigerator for up to 3-4 days.

Notes

  • Make sure the cream cheese is fully softened for a smooth filling.
  • Don’t overmix the cheesecake batter after adding the eggs to prevent cracking.
  • Cooling the cupcakes slowly in the oven helps prevent cracking.
  • Chilling the cupcakes completely is essential for the best flavor and texture.
  • Granny Smith or Honeycrisp apples work well for the topping.

« Previous Post
Spicy Chicken Burrito: Recipe, Ingredients, and Delicious Variations
Next Post »
Air Fryer Stuffed Sweet Potato: A Delicious & Healthy Recipe

If you enjoyed this…

Dessert

Pumpkin Pecan Cobbler Dessert: A Delicious Fall Treat You Must Try

Dessert

Queso Flan: The Ultimate Guide to Making This Delicious Dessert

Dessert

Chocolate Strawberry Brownies: Indulge in a Decadent Dessert Delight

Primary Sidebar

Browse by Diet

AppetizerAppetizerBreakfastBreakfastDinnerDinnerLunchLunchDessertDessert

Chocolate Rugelach: The Ultimate Guide to Baking Delicious Treats

Cheesesteak Stuffed Peppers: A Delicious and Easy Recipe

Cosmic Brownie Cookies: The Ultimate Guide to Baking Perfection

  • California Consumer Privacy Act (CCPA)
  • contact us
  • DMCA
  • Cookie Privacy Policy
  • Privacy Policy
  • Terms of Use

© 2025 · Cuisine Recipe Theme · Genesis Framework · Disclosure · Website Design by Anchored Design